Referential of Raw T1 MRI

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Inheritance graph

Defined in file : brainvisa/toolboxes/freesurfer/types/freesurfer_types.py

Used in the following processes

AddScannerBasedReferential
Anat To FreeSurfer Meshes Transformation
Check raw data pipeline (PET)
Convert Freesurfer images to nifti format
convert_disco_subject_icbm_fields
Import Ecat PET Dynamic & T1MRI
Import FreeSurfer grey/white segmentation to Morphologist
Import MCRIBS dHCP preterm subject into a brainvisa database
Import T1 MRI
Import T1 MRI, longitudinal version
Simplified Morphologist 2025

Associated formats

Referential

Associated ontology rules

  • brainvisa-3.0 :
    • {protocol}/{subject}/registration/RawT1-<subject>
    {protocol}/{subject}/registration/RawT1-<subject>-{acquisition}
  • brainvisa-3.1.0 :
    • {protocol}/{subject}/t1mri/{acquisition}/registration/RawT1-<subject>_<acquisition>
  • brainvisa-3.2.0 :
    • {center}/{subject}/t1mri/{acquisition}/registration/RawT1-<subject>_<acquisition>
  • freesurfer :
    • {subject}/mri/orig/001
  • freesurfer-bids :
    • subj-{subject}/ses-{acquisition}/mri/orig/001
  • morphologist-bids-1.0 :
    • sub-{subject}/ses-{session}/anat/t1mri/{acquisition}/registration/RawT1-<subject>_<acquisition>
  • morphologist-bids-2.0 :
    • sub-{subject}/ses-{session}/{bids}/registration/sub-<subject>_ses-<session>_<bids>_T1w

    Key attributes

  • brainvisa-3.0 :
    • protocol ,  subject ,  acquisition
  • brainvisa-3.1.0 :
    • protocol ,  subject ,  acquisition
  • brainvisa-3.2.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  center ,  subject ,  acquisition
  • freesurfer :
    • subject
  • freesurfer-bids :
    • subject ,  acquisition
  • morphologist-bids-1.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  subject ,  session ,  acquisition
  • morphologist-bids-2.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  subject ,  session ,  bids